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Copyvio issues

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I've removed the career section from the main article page, the first three paragraphs are a direct copy from [1], the rest is also questionable, see [2] and [3]. Amkilpatrick (talk) 08:47, 16 May 2018 (UTC)[reply]

Overly detailed

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Re this edit, I've moved the list of journal articles here - if relevant they should be cited appropriately in the article rather than just dumped at the end. The patents still need to be fixed... Amkilpatrick (talk)

  • Draft genome sequence of the rubber tree Hevea brasiliensis (2013)[1]
  • Complete Genome Sequence of the Thermophilic Bacterium Geobacillus thermoleovorans CCB_US3_UF5 (2012)[2]
  • Complete genome sequencing and analysis of Saprospira grandis str. Lewin, a predatory marine bacterium (2012)[3]
  • Sequencing papaya X and Yh chromosomes reveals molecular basis of incipient sex chromosome evolution (2012)[4]
  • Complete Genome Sequence of the Aerobic Facultative Methanotroph Methylocella silvestris BL2 (2010)[5]
  • An oxygen-sensing diguanylate cyclase and phosphodiesterase couple for c-di-GMP control (2009)[6]
  • The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus) (2008)[7]
  • Unraveling ancient hexaploidy through multiply-aligned angiosperm gene maps. (2008)[8]
  • Complete genome sequence of the extremely acidophilic methanotroph isolate V4, Methylacidiphilum infernorum, a representative of the bacterial phylum Verrucomicrobia (2008) [9]
  • Isolation of novel bacteria, including a candidate division, from geothermal soils in New Zealand (2008)[10]
  • Finding and comparing syntenic regions among Arabidopsis and the outgroups papaya, poplar, and grape: CoGe with rosids (2008)[11]
  • Construction of a sequence-tagged high-density genetic map of papaya for comparative structural and evolutionary genomics in brassicales (2007)[12]
  • Methane oxidation by an extremely acidophilic bacterium of the phylum Verrucomicrobia (2007)[13]
  • Aerotactic responses in bacteria to photoreleased oxygen (2002)[14]
  • Genome sequence of Halobacteriumspecies NRC-1 (2000)[15]
  • Myoglobin-like aerotaxis transducers in Archaea and Bacteria. (2000)[16]
  • Die Geißelbewegung halophiler Bakterien (1987)[17]

Dumped overly long list of patents from main article

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Patents awarded while at University of Hawaii at Manoa

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  • Heme proteins hemAT-Hs and hemAT-Bs and their use in medicine and microsensors. US Patent No. 7,129,329. 31 Oct. 2006[18]

Patents awarded while at University Sains Malaysia

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  • RECOMBINANT ALPHA AMYLASE AND THE PRODUCTION THEREOF. MY165644. 2018 (filed 2012)[19]
  • A METHOD OF REGULATING LIGNIN CONTENT IN THE PLANT OF HEVEA BRASILIENSIS. MY165254. 2018 (2012)[20]
  • CIS-PRENYL TRANSFERASE FROM THE PLANT HEVEA BRASILIENSIS. MY160195. 2017 (filed 2012)[21]
  • A METHOD FOR REGULATING THE BIOSYNTHESIS, CONVERSION AND UTILIZATION OF PRENYL-PYROPHOSPHATES IN HEVEA BRASILIENSIS WO2013051925. 2013 (filed 2012)[22]
  • A METHOD FOR REGULATING CYTOSOLIC ISOPRENOID BIOSYNTHESIS IN HEVEA BRASILIENSIS. WO2013039378. 2013. (filed 2012)[23]
  • RUBBER ALLERGENIC PROTEINS AND IMMUNOASSAY DERIVED THEREOF. WO2013036101. 2013 (filed 2012)[24]
  • A METHOD FOR REGULATING PLASTIDIAL ISOPRENOID BIOSYNTHESIS IN HEVEA BRASILIENSIS. WO2013036100. 2013 (filed 2012)[25]
  • A METHOD OF REGULATING MONOLIGNOLS POLYMERIZATION ON CELL WALLS OF THE PLANT HEVEA BRASILIENSIS AND A TRANSGENIC PLANT ACQUIRED THEREOF. WO2012161564. 2012[26]
  • A METHOD OF MANIPULATING LIGNIN CONTENT IN PLANTS. WO2012161563. 2012[27]
  • A METHOD FOR REGULATING BIOSYNTHESIS OF MONOLIGNOLS. WO2012158016. 2012.[28]
  • UNDECAPRENYL PYROPHOSPHATE SYNTHASE FROM THE PLANT HEVEA BRASILIENSIS. WO2012148253 2012[29]

Patents awarded while at Bangladesh Jute Genome Project

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  • Nucleic acid molecules encoding enzymes that confer disease resistance in jute. US Patent No. 9,873,890. 23 Jan. 2018 (filed 2012).[30]
  • Nucleic acid molecules encoding enzymes that confer disease resistance in jute. MY164626. 2018 (filed 2012)[31]
  • LIGNIN DEGRADING ENZYMES FROM MACROPHOMINA PHASEOLINA AND USES THEREOF. PT2885404. 2018 (filed 2013)[32]
  • Pectin degrading enzymes from Macrophomina phaseolina and uses thereof. US Patent No. 9,765,322. 19 Sep. 2017 (filed 2013).[33]
  • Pectin degrading enzymes from Macrophomina phaseolina and uses thereof. EP20130829902. Pending (filed 2013).[34]
  • Pectin degrading enzymes from Macrophomina phaseolina and uses thereof. WO 2014028772 A2. 20 Feb. 2014 (filed 2013).[35]
  • Pectin degrading enzymes from Macrophomina phaseolina and uses thereof. ZA201501635. 2016 (filed 2013)[36]
  • Cellulose and/or hemicelluloses degrading enzymes from Macrophomina phaseolina and uses thereof. US Patent No. 9,765,315. 19 Sep. 2017 (filed 2013).[37]
  • Cellulose and/or hemicelluloses degrading enzymes from Macrophomina phaseolina and uses thereof. ZA201501632. 2015 (filed 2013).[38]
  • Polynucleotides encoding enzymes from the jute lignin biosynthetic pathway. US Patent No. 9,683,241. 20 Jun. 2017 (filed 2012).[39]
  • Polynucleotides encoding enzymes from the jute lignin biosynthetic pathway. PT2701487. 2017 (filed 2012)[40]
  • Nucleotide Sequence Encoding Wuschel-Related Homeobox4 (WOX4) Protein From Corchorus Olitorius and Corchorus Capsularis and Methods of Use For Same. DK2922961. 2018 (filed 2014)[41]
  • Nucleotide Sequence Encoding Wuschel-Related Homeobox4 (WOX4) Protein From Corchorus Olitorius and Corchorus Capsularis and Methods of Use For Same. US Patent Application No. 14/781,169 (filed 2014).[42]
  • NUCLEOTIDE SEQUENCE ENCODING HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22 (HD-ZIP PROTEIN 22) FROM CORCHORUS OLITORIUS AND CORCHORUS CAPSULARIS AND METHODS OF USE - HAT22 (HD-ZIP 22). HK1218426 (A1). 2017 (filed 2014)[43]
  • Nucleotide Sequence Encoding Homeobox-Leucine Zipper Protein HAT22 (HD-ZIP Protein 22) From Corchorus Olitorius and Corchorus Capsularis and Methods of Use. US Patent Application No. 14/781,243 (filed 2014).[44]

Amkilpatrick (talk) 06:23, 15 April 2020 (UTC)[reply]


  1. ^ Cite error: The named reference :3 was invoked but never defined (see the help page).
  2. ^ Cite error: The named reference :11 was invoked but never defined (see the help page).
  3. ^ Cite error: The named reference :10 was invoked but never defined (see the help page).
  4. ^ Wang, Jianping; Na, Jong-Kuk; Yu, Qingyi; Gschwend, Andrea R.; Han, Jennifer; Zeng, Fanchang; Aryal, Rishi; VanBuren, Robert; Murray, Jan E. (2012-08-21). "Sequencing papaya X and Yh chromosomes reveals molecular basis of incipient sex chromosome evolution". Proceedings of the National Academy of Sciences. 109 (34): 13710–13715. Bibcode:2012PNAS..10913710W. doi:10.1073/pnas.1207833109. ISSN 0027-8424. PMC 3427123. PMID 22869747.
  5. ^ Cite error: The named reference :9 was invoked but never defined (see the help page).
  6. ^ Tuckerman, Jason R.; Gonzalez, Gonzalo; Sousa, Eduardo H. S.; Wan, Xuehua; Saito, Jennifer A.; Alam, Maqsudul; Gilles-Gonzalez, Marie-Alda (2009-10-20). "An Oxygen-Sensing Diguanylate Cyclase and Phosphodiesterase Couple for c-di-GMP Control". Biochemistry. 48 (41): 9764–9774. doi:10.1021/bi901409g. ISSN 0006-2960. PMID 19764732.
  7. ^ Cite error: The named reference :2 was invoked but never defined (see the help page).
  8. ^ Tang, Haibao; Wang, Xiyin; Bowers, John E.; Ming, Ray; Alam, Maqsudul; Paterson, Andrew H. (2008-12-01). "Unraveling ancient hexaploidy through multiply-aligned angiosperm gene maps". Genome Research. 18 (12): 1944–1954. doi:10.1101/gr.080978.108. ISSN 1088-9051. PMC 2593578. PMID 18832442.
  9. ^ Cite error: The named reference :8 was invoked but never defined (see the help page).
  10. ^ Stott, Matthew B.; Crowe, Michelle A.; Mountain, Bruce W.; Smirnova, Angela V.; Hou, Shaobin; Alam, Maqsudul; Dunfield, Peter F. (August 2008). "Isolation of novel bacteria, including a candidate division, from geothermal soils in New Zealand". Environmental Microbiology. 10 (8): 2030–2041. doi:10.1111/j.1462-2920.2008.01621.x. ISSN 1462-2912. PMID 18422642.
  11. ^ Lyons, Eric; Pedersen, Brent; Kane, Josh; Alam, Maqsudul; Ming, Ray; Tang, Haibao; Wang, Xiyin; Bowers, John; Paterson, Andrew (2008-12-01). "Finding and Comparing Syntenic Regions among Arabidopsis and the Outgroups Papaya, Poplar, and Grape: CoGe with Rosids". Plant Physiology. 148 (4): 1772–1781. doi:10.1104/pp.108.124867. ISSN 0032-0889. PMC 2593677. PMID 18952863.
  12. ^ Chen, Cuixia; Yu, Qingyi; Hou, Shaobin; Li, Yingjun; Eustice, Moriah; Skelton, Rachel L.; Veatch, Olivia; Herdes, Rachel E.; Diebold, Lauren (2007-12-01). Construction of a Sequence-Tagged High-Density Genetic Map of Papaya for Comparative Structural and Evolutionary Genomics in Brassicales. Vol. 177. pp. 2481–2491. doi:10.1534/genetics.107.081463. ISSN 0016-6731. PMC 2219497. PMID 17947401. {{cite book}}: |journal= ignored (help)
  13. ^ Dunfield, Peter F.; Yuryev, Anton; Senin, Pavel; Smirnova, Angela V.; Stott, Matthew B.; Hou, Shaobin; Ly, Binh; Saw, Jimmy H.; Zhou, Zhemin (2007-11-14). "Methane oxidation by an extremely acidophilic bacterium of the phylum Verrucomicrobia". Nature. 450 (7171): 879–882. Bibcode:2007Natur.450..879D. doi:10.1038/nature06411. ISSN 0028-0836. PMID 18004300.
  14. ^ Yu, Hyung Suk; Saw, Jimmy H.; Hou, Shaobin; Larsen, Randy W.; Watts, Kylie J.; Johnson, Mark S.; Zimmer, Michael A.; Ordal, George W.; Taylor, Barry L. (2002-12-01). "Aerotactic responses in bacteria to photoreleased oxygen". FEMS Microbiology Letters. 217 (2): 237–242. doi:10.1111/j.1574-6968.2002.tb11481.x. ISSN 0378-1097.
  15. ^ Ng, Wailap Victor; Kennedy, Sean P.; Mahairas, Gregory G.; Berquist, Brian; Pan, Min; Shukla, Hem Dutt; Lasky, Stephen R.; Baliga, Nitin S.; Thorsson, Vesteinn (2000-10-24). "Genome sequence of Halobacterium species NRC-1". Proceedings of the National Academy of Sciences. 97 (22): 12176–12181. Bibcode:2000PNAS...9712176N. doi:10.1073/pnas.190337797. PMC 17314. PMID 11016950.
  16. ^ Hou, Shaobin; Larsen, Randy W.; Boudko, Dmitri; Riley, Charles W.; Karatan, Ece; Zimmer, Mike; Ordal, George W.; Alam, Maqsudul (February 2000). "Myoglobin-like aerotaxis transducers in Archaea and Bacteria". Nature. 403 (6769): 540–544. Bibcode:2000Natur.403..540H. doi:10.1038/35000570. ISSN 0028-0836. PMID 10676961.
  17. ^ Marwan, Wolfgang; Alam, Maqsudul; Oesterhelt, Dieter (1987). "Die Geißelbewegung halophiler Bakterien". Naturwissenschaften (in German). 74 (12): 585–590. Bibcode:1987NW.....74..585M. doi:10.1007/bf00368516. ISSN 0028-1042.
  18. ^ Heme proteins hemAT-Hs and hemAT-Bs and their use in medicine and microsensors, 1999-12-06, retrieved 2018-06-20
  19. ^ "Bibliographic data: MY165644 (A) ― 2018-04-18". worldwide.espacenet.com. Retrieved 2018-06-26.
  20. ^ "Bibliographic data: MY165254 (A) ― 2018-03-14". worldwide.espacenet.com. Retrieved 2018-06-26.
  21. ^ "Bibliographic data: MY160195 (A) ― 2017-02-28". worldwide.espacenet.com. Retrieved 2018-06-26.
  22. ^ "Bibliographic data: WO2013051925 (A1) ― 2013-04-11". worldwide.espacenet.com. Retrieved 2018-06-26.
  23. ^ "Bibliographic data: WO2013039378 (A1) ― 2013-03-21". worldwide.espacenet.com. Retrieved 2018-06-26.
  24. ^ "Bibliographic data: WO2013036101 (A1) ― 2013-03-14". worldwide.espacenet.com. Retrieved 2018-06-26.
  25. ^ "Bibliographic data: WO2013036100 (A1) ― 2013-03-14". worldwide.espacenet.com. Retrieved 2018-06-26.
  26. ^ "Bibliographic data: WO2012161564 (A1) ― 2012-11-29". worldwide.espacenet.com. Retrieved 2018-06-26.
  27. ^ "Bibliographic data: WO2012161563 (A1) ― 2012-11-29". worldwide.espacenet.com. Retrieved 2018-06-26.
  28. ^ "Bibliographic data: WO2012158016 (A1) ― 2012-11-22". worldwide.espacenet.com. Retrieved 2018-06-26.
  29. ^ "Bibliographic data: WO2012148253 (A1) ― 2012-11-01". worldwide.espacenet.com. Retrieved 2018-06-26.
  30. ^ Nucleic acid molecules encoding enzymes that confer disease resistance in jute, 2012-06-08, retrieved 2018-06-20
  31. ^ "Bibliographic data: MY164626 (A) ― 2018-01-18". worldwide.espacenet.com. Retrieved 2018-06-26.
  32. ^ "Bibliographic data: PT2885404 (T) ― 2018-05-17". worldwide.espacenet.com. Retrieved 2018-06-26.
  33. ^ Pectin degrading enzymes from macrophomina phaseolina and uses thereof, 2013-08-15, retrieved 2018-06-20
  34. ^ Pectin degrading enzymes from macrophomina phaseolina and uses thereof, 2013-08-15, retrieved 2018-06-26
  35. ^ "Patent WO2014028772A2 - Pectin degrading enzymes from macrophomina phaseolina and uses thereof". Google Books. Maqsudul Alam, Mohammed Shahidul ISLAM, Mohammed Mosaddeque HOSSEN, Mohammed Samiul HAQUE, Mohammed Monjurul ALAM, Bangladesh Jute Research Institute. 2013-08-15.{{cite journal}}: CS1 maint: others (link)
  36. ^ "Bibliographic data: ZA201501635 (B) ― 2016-01-27". worldwide.espacenet.com. Retrieved 2018-06-26.
  37. ^ Cellulose and/or hemicelluloses degrading enzymes from Macrophomina phaseolina and uses thereof, 2013-08-15, retrieved 2018-06-20
  38. ^ "Bibliographic data: ZA201501632 (B) ― 2015-12-23". worldwide.espacenet.com. Retrieved 2018-06-26.
  39. ^ Polynucleotides encoding enzymes from the jute lignin biosynthetic pathway, 2012-04-25, retrieved 2018-06-20
  40. ^ "Bibliographic data: PT2701487 (T) ― 2017-11-14". worldwide.espacenet.com. Retrieved 2018-06-26.
  41. ^ "Bibliographic data: DK2922961 (T3) ― 2018-06-14". worldwide.espacenet.com. Retrieved 2018-06-26.
  42. ^ Nucleotide Sequence Encoding Wuschel-Related Homeobox4 (WOX4) Protein from Corchorus Olitorius and Corchorus Capsularis and Methods of Use for Same, 2014-11-20, retrieved 2018-06-20
  43. ^ "Bibliographic data: HK1218426 (A1) ― 2017-02-17". worldwide.espacenet.com. Retrieved 2018-06-26.
  44. ^ Nucleotide Sequence Encoding Homeobox-Leucine Zipper Protein HAT22 (HD-ZIP Protein 22) from Corchorus Olitorius and Corchorus Capsularis and Methods of Use, 2014-11-21, retrieved 2018-06-20

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