User:Ninjatacoshell/List of nodulated actinorhizal plants and their symbionts
Introduction
[edit]Under nitrogen-limiting conditions, many plants are capable of forming a symbiotic interaction with nitrogen-fixing bacteria, resulting in a new plant organ, called a root nodule. This most commonly occurs with legumes, but has been found in select cases outside of that family: actinorhizal plants. Even though it is not considered an actinorhizal plant, Trema (syn. Parasponia) is included here since it is closely related to actinorhizal plants.
This list does not include other sources of root galls or tumors, such as pathogenic bacteria (e.g., Agrobacterium tumefaciens) or parasitic nematodes (e.g., Meloidogyne javanica). It also does not include coralloid roots infected with cyanobacteria (often incorrectly referred to as nodulation), as is found in Gunnera and cycads, or myconodules, as found in Alnus. Older sources may indicate epithets which are no longer standard and should be updated to reflect currently accepted nomenclature (but a note should be included to indicate the difference). Plant species which are listed, but for which no bacterial species has been identified, are included based on the presence of nitrogen-fixing root nodules. This list is sortable (click on the heading you wish to sort by).
List
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Notes
[edit]- 1 2 These species have not been cultured and so are classified as Candidatus.
- 3 Canopy nodulation (nodulation of adventitious roots in the canopy) has been observed for these species.
- 4 5 6 7 The taxonomic status of these species is unresolved.
References
[edit]- ^ a b c d e f g h i j k l m n o p q r s t u v w x y z aa ab ac ad ae af ag ah ai aj ak al am an ao ap aq ar as at au av aw ax ay az ba bb bc bd be bf bg bh bi Becking JH. (1970). "Frankiaceae fam. nov. (Actinomycetales) with one new combination and six new species of the genus Frankia Brunchorst 1886, 174". IJSEM. 20 (2): 201–220. doi:10.1099/00207713-20-2-201. Note: Several species of Frankia are listed in this paper. However, all but Frankia alni were invalidated by the release of the Approved Lists of Bacterial Names.
- ^ a b c d e f g h i j k l m n o p q "Diversity of Frankia Strains in Root Nodules of Plants from the Families Elaeagnaceae and Rhamnaceae". Applied and Environmental Microbiology. 64 (9): 3539–3543. 1998. doi:10.1128/AEM.64.9.3539-3543.1998.
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ignored (help) - ^ a b c d e f g h i j k l m n o p q r s t u v "Molecular phylogenies of plants and Frankia support multiple origins of actinorhizal symbioses". Mol Phylogenet Evol. 13 (3): 493–503. 1999. doi:10.1006/mpev.1999.0692. PMID 10620407.
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ignored (help) - ^ a b c d "Amplification of 16S rRNA genes from Frankia strains in root nodules of Ceanothus griseus, Coriaria arborea, Coriaria plumosa, Discaria toumatou, and Purshia tridentata". Applied and Environmental Microbiology. 62 (8): 2904–2909. 1996.
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ignored (help) - ^ a b c d e f g "Absence of Cospeciation between the Uncultured Frankia Microsymbionts and the Disjunct Actinorhizal Coriaria Species". BioMed Research International. 2014 (924235): 1–9. 2014. doi:10.1155/2014/924235.
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ignored (help)CS1 maint: unflagged free DOI (link) Cite error: The named reference "Nouioui2" was defined multiple times with different content (see the help page). - ^ "Fine structure of actinorhizal nodules of Coriaria arborea (Coriariaceae)". New Zealand J. Bot. 20: 93–103. 1982. doi:10.1080/0028825X.1982.10426409.
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ignored (help) - ^ a b c d "Typical Frankia infect actinorhizal plants exotic to New Zealand". New Zealand Journal of Botany. 35 (3): 361–367. 1997. doi:10.1080/0028825X.1997.10410161.
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ignored (help) - ^ a b c "Cultivating the uncultured: Growing the recalcitrant cluster-2 Frankia strains". Sci Rep. 5: 13112. 2015. doi:10.1038/srep13112. PMID 26287281.
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ignored (help) - ^ a b "Genome sequence of "Candidatus Frankia datiscae" Dg1, the uncultured microsymbiont from nitrogen-fixing root nodules of the dicot Datisca glomerata". J Bacteriol. 193 (24): 7017–7018. 2011. doi:10.1128/JB.06208-11. PMC 3232863. PMID 22123767.
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ignored (help) - ^ a b c "Molecular phylogeny of the genus Frankia and related genera and emendation of the family Frankiaceae". Int J Syst Bacteriol. 46 (1): 1–9. 1996. doi:10.1099/00207713-46-1-1. PMID 8573482.
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ignored (help) - ^ a b c d e f g h "Symbiotic Frankia bacteria in Alnus forests in Mexico and the United States of America: Is geographic location a good predictor of assemblage structure?". Botany. 90 (6): 423–431. 2012. doi:10.1139/b2012-006.
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ignored (help) - ^ a b c d e f g h i j k l m n o p q r s t u "Global biogeography of Alnus‐associated Frankia actinobacteria". New Phytologist. 204 (2): 979–988. 2014. doi:10.1111/nph.12962.
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ignored (help) - ^ a b c d e f g h i j k l "Phylogenetic relationships among Frankia genomic species determined by use of amplified 16S rDNA sequences". J Bacteriol. 173 (13): 4072–4078. 1991. PMID 2061287.
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ignored (help) - ^ a b c d "Frankia canadensis sp. nov., isolated from root nodules of Alnus incana subspecies rugosa". IJSEM. 68 (9): 3001–3011. 2018. doi:10.1099/ijsem.0.002939.
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ignored (help) - ^ a b "不同桤木根瘤内生菌的分离培养及生物学特性" [Isolation and biological characteristics of Frankia strains from different kinds of Alnus]. Journal of Central South University of Forestry & Technology. 30 (7). 2010.
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ignored (help) - ^ a b c d "The Frankia alni Symbiotic Transcriptome". Mol Plant Microbe Interact. 23 (5): 593–607. 2010. doi:10.1094/MPMI-23-5-0593. PMID 20367468.
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ignored (help) - ^ "Draft Genome Sequence of Frankia sp. Strain QA3, a Nitrogen-Fixing Actinobacterium Isolated from the Root Nodule of Alnus nitida". Genome Announcements. 1 (2): e00103-13. 2013. doi:10.1128/genomeA.00103-13.
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ignored (help) - ^ "Diversity of Frankia Populations in Root Nodules of Geographically Isolated Arizona Alder Trees in Central Arizona (United States)". Appl Environ Microbiol. 75 (21): 6913–6918. 2009. doi:10.1128/AEM.01103-09. PMC 2772444. PMID 19734342.
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ignored (help) - ^ "Frankia and Alnus rubra canopy roots: An assessment of genetic diversity, propagule availability, and effects on soil nitrogen". Microb Ecol. 59 (2): 214–20. 2009. doi:10.1007/s00248-009-9587-8. PMID 19787390.
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ignored (help) - ^ "わが国に生育する放線菌根性植物とフランキア菌" [Actinorhizal plants and Frankia in Japan] (PDF). 森林総合研究所研究報告 (Bulletin of the Forestry and Forest Products Research Institute). 7 (1): 67–80. 2008.
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ignored (help) - ^ a b c d e f g h i j k l m n o p q "Isolation, characterisation (PCR-RFLP) and specificity of Frankia from eight Gymnostoma species endemic to New Caledonia". Eur J Soil Biol. 35 (4): 199–205. 1999. doi:10.1016/S1164-5563(10)70006-6.
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ignored (help) - ^ "Actinorhizal symbioses: recent advances in plant molecular and genetic transformation studies". Crit Rev Plant Sci. 17: 1–28. 1998. doi:10.1080/07352689891304177.
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ignored (help) - ^ a b c d e f "Diversity and Specificity of Frankia Strains in Nodules of Sympatric Myrica gale, Alnus incana, and Shepherdia canadensis Determined by rrs Gene Polymorphism". Appl Environ Microbiol. 67 (5): 2116–2122. 2001. doi:10.1128/AEM.67.5.2116-2122.2001. PMC 92844. PMID 11319089.
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ignored (help) - ^ "Bradyrhizobia isolated from root nodules of Parasponia (Ulmaceae) do not constitute a separate coherent lineage". Int J Syst Evol Microbiol. 56 (5): 1013–8. 2006. doi:10.1099/ijs.0.63897-0. PMID 16627647.
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ignored (help) - ^ a b "Rhizobium sp. Strain NGR234 and R. fredii USDA257 Share Exceptionally Broad, Nested Host Ranges". Mol Plant–Microbe Interact. 512 (4): 293–318. 1999. doi:10.1094/MPMI.1999.12.4.293. PMID 10188270.
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ignored (help) - ^ "Early development of Rhizobium-induced root nodules of Parasponia rigida. I. Infection and early nodule initiation". Protoplasma. 123 (1): 26–37. 1984. doi:10.1007/BF01283179.
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ignored (help) - ^ "Early development of Rhizobium-induced root nodules of Parasponia rigida. II. Nodule morphogenesis and symbiotic development" (PDF). Can J Bot. 63 (1): 25–35. 1985.
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ignored (help) - ^ a b c Carú M. (1993). "Characterization of native Frankia strains isolated from chilean shrubs (Rhamnaceae)". Plant and Soil. 157 (1): 137–145. doi:10.1007/BF00038757.
- ^ "Draft genome sequence of Frankia sp. strain BCU110501, a nitrogen-fixing actinobacterium isolated from nodules of Discaria trinevis". Genome Announc. 1 (4): e00503–13. 2013. doi:10.1128/genomeA.00503-13. PMC 3709158. PMID 23846281.
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ignored (help) - ^ Becking JH. (1984). Identification of the endophypte of Dryas and Rubus (Rosaceae). Vol. 78. pp. 105–128. doi:10.1007/978-94-009-6158-6_11. ISBN 978-94-009-6160-9. JSTOR 42934565.
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ignored (help) - ^ "An assessment of soil enrichment by actinorhizal N2 fixation using δ15N values in a chronosequence of deglaciation at Glacier Bay, Alaska". Plant and Soil. 254 (1): 11–17. 2004. doi:10.1023/A:1024950913234.
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ignored (help) - ^ a b "Assessment of N2 fixation and N cycling by Dryas along a chronosequence within the forelands of the Athabasca Glacier, Canada". Soil Biology and Biochemistry. 26 (5): 623–632. 1994. doi:10.1016/0038-0717(94)90251-8.
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ignored (help) - ^ "Molecular diversity of nifH genes from bacteria associated with high arctic dwarf shrubs". Microbial Ecology. 51 (4): 516–25. 2006. doi:10.1007/s00248-006-9070-8. PMID 16649061.
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ignored (help) - ^ Markham JH. (2009). "Does Dryas integrifolia fix nitrogen?". Botany. 87 (11): 1106–1109. doi:10.1139/B09-071.